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Best accounting software for multi-entity businesses

Best accounting software for multi-entity businesses

Michael Davis
Contributing writer, BILL
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Running multiple businesses or locations at once is a challenge, but the right accounting software can simplify your finances without sacrificing control and visibility. When you use multi-entity accounting software, you should be able to see the financial breakdowns for each unique entity, plus the overall performance of all locations combined.

Key takeaways

Multi-entity accounting software streamlines financial management across multiple locations, ensuring control and visibility.

Top multi-entity accounting software features to look for include customizable workflows, separation of entities, and both high-level and detailed financial views.

When selecting multi-entity accounting software, prioritize factors like customizability, reporting options, pricing, integrations, and available resources for education and support.

What is multi-entity accounting software?

Multi-entity accounting software enables you to manage multiple locations or businesses from one platform, helping you to streamline approvals and payments without losing visibility into your financial data.

Implementing controls and payment security is extremely important for multi-entity organizations since upper management is less involved in each location's day-to-day operations. 

Finding software that allows you to review the financial reporting for each location separately ensures that your company is protected against internal and external fraud attempts, such as duplicate or fraudulent invoices. 

This allows your finance team to have insights into multiple entities, both separately and collectively, so you can make informed business decisions and strategize for future growth. Having both separate overviews and consolidated financial statements helps you monitor the financial health of your business so you can make informed business decisions. 

Multi-entity capabilities to look for in accounting software

Multi-entity capabilities to look for in accounting software

These are the top 3 features to look for in multi-entity accounting software: customizable workflows, the ability to separate different locations or entities, and bird’s eye and granular views.

1. Customizable workflows

When evaluating the best multi-entity software for your business, the primary thing you should look for is customization. Running multi-entity companies requires intense oversight, and being able to customize your approval workflows is essential. One of the best ways to ensure control is to create different approval levels. 

For example, you can set payments of over $5,000 dollars to require the approval of a second store manager, and approvals of over $10,000 to require the approval of a district manager. If you’re a BILL customer, all comments and approvals are logged and timestamped within for future reference, so you can do periodic audits of financial data and ensure the approval process runs smoothly. Regardless of what thresholds and approvers you choose, it’s essential to build a workflow that grants oversight without overwhelming your managers. 

2. The ability to separate different locations or entities

The right accounting software can even help you manage multiple locations with one central team. For example, BILL customer Millennium Physicians manages almost 40 physical locations with one AP team, giving their head office oversight without encroaching on the independence of each practice. 

“We're a multi-specialty medical group, so even though we're one tax ID, we operate at financially independent practices within the group. Then everything consolidates into one set of financials, but each one of those independent practices has their own bank account. So really we have 33 financially independent practices to keep track of.”  - Christopher Hopeck , CFO at Millennium Physicians

Using BILL, Millenium Physicians creates a unique email for each practice so the invoices can be emailed to the correct set of books. Then, their central team reviews the accounts to ensure nothing is missed. The best multi-entity accounting software will allow you to customize your policies and workflows to fit the unique needs of your business. 

3. Bird’s eye and granular views

The best multi-entity accounting software will allow you to get a granular view of each location and a bird’s eye view of your performance across all sites. Having this data at your fingertips helps you make the overarching business decisions like hiring, offering new services, or opening additional locations. 

Software offerings like QuickBooks, Sage Intacct, and Oracle NetSuite all offer robust dashboards that are perfect for gleaning data-driven insights across multiple entities, while still providing a shared general ledger that provides top-level financial reporting.

The best accounting software with multi-entity capabilities

It’s essential to choose accounting software that allows you to create separate instances and policies for each location, while still maintaining a birds’ eye view of spending overall. 

Fortunately, there are accounting softwares with features designed to help you run multiple locations from one central hub, and these options include QuickBooks, Xero, Sage Intacct, and NetSuite. 

QuickBooks

You can have as many companies as you'd like under the same QuickBooks Online account, which makes it easy to manage multiple entities. While each company requires an additional subscription, you can access them with the same sign-in info to quickly toggle between your locations and manage everything cohesively. If you have multiple companies under one account, you’ll be asked to pick which company you want to evaluate upon sign-in. 

Xero

Xero also allows you to have multiple businesses under one login, with each entity requiring its own subscription. This multi-company function allows you to view the separate accounting and outstanding tasks for each location, all while keeping the organizations distinct.

Sage Intacct

Sage Intacct provides one of the leading solutions for multi entity companies, with the ability to view both the unique and consolidated views. Sage’s multi-entity insights provides aggregated reporting and an umbrella view that helps you see the combined performance of all of your entities, then click into the individual businesses to see their unique insights. This deep financial reporting allows you to look for ways to optimize and scale, helping you strategize for future growth. 

NetSuite

NetSuite offers multi-entity and multi-book accounting capabilities, which they combine with real-time data to provide a comprehensive overview of business performance. NetSuite also features the ability to create custom charts of different regions or subsets of locations so you can make informed business decisions as you scale and grow.

How to choose an accounting software for a multi-entity business

How to choose the best multi-entity accounting software for your business

Choosing the best multi-entity accounting software is crucial to managing the complexities of your operations. Whether setting different approval thresholds or managing multiple financial accounts, a few key capabilities are essential to maintaining control and visibility every step of the way.

1. Look for customizability 

The most important feature for any multi entity accounting software is the ability to customize it to your needs. It’s essential that your settings, approval workflows, and administrative needs can shift as your business scales, so look for a solution that allows you to pivot in the future.

2. Evaluate reporting options

To make informed business decisions about your entities, you’ll need all possible financial data at your fingertips. This helps you make decisive actions like hiring, offering new services, or opening additional locations. You’ll want access to robust dashboards to glean data-driven insights across multiple entities, along with a shared general ledger that shows your overall performance.

3. Explore pricing 

This is one of the biggest pain points for multi-entity businesses, as software providers typically charge for each separate business. You should also look closely at whether they charge per user, because this can become quite expensive when you need approvers at each location. But despite the costs, having easy access to financial data and the increased control is often worth it for teams that have to manage multiple locations at once. 

4. Integrations

For a complete financial picture, it’s important to integrate your accounting software with other financial tools that will help your business save time. Consider what tax, accounts payable, and expense reporting softwares you already use and ensure that your new selection integrates seamlessly with your tech stack. For example, if you’re already a BILL user, all of the software options listed in this article already integrate seamlessly to help you save time and reduce manual errors. 

5. Additional resources

Running multiple entities is a delicate balancing act, and additional education can help your team master your processes. Look for a provider with ongoing education or even a master class that can help your team understand the complexities of your new multi entity accounting software! 

Level up financial operations for multi-entity organizations

Your multi-entity accounting software is just one piece of the financial puzzle for multi-entity businesses. The complete package comes when you have accounting, financial automation, and spend management software all working in perfect harmony. BILL provides both AP automation software to help you manage larger purchases via invoices, as well as corporate cards to manage day-to-day spending and expense management. 

You can assign budgets by location or create separate categories to prevent entities from overspending, and the app logs receipts by category or department for future review. All of these tools provide the perfect blend of control and visibility to help your business manage separate locations without losing focus on the big financial picture. 

Ready to optimize your financial operations with the right multi-entity accounting software? Demo BILL to see how to manage multiple locations from one single platform.

Author
Michael Davis
Contributing writer, BILL
Michael specializes in helping businesses optimize financial operations by staying up-to-date with industry trends and translating insights into real-world applications. With expertise in AP, cash flow, and fintech, Michael breaks down complex topics to help businesses continue to grow.
Author
Michael Davis
Contributing writer, BILL
Michael specializes in helping businesses optimize financial operations by staying up-to-date with industry trends and translating insights into real-world applications. With expertise in AP, cash flow, and fintech, Michael breaks down complex topics to help businesses continue to grow.
Get more from BILL
Subscribe to finance insights and thought leadership content delivered straight to your inbox.
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Software Comparison

BILL Spend & Expense
Best for AI expense automation
4.5 on G2
  • Smart corporate cards with real-time tracking, flexible limits, and instant visibility into every transaction across your team [1]
  • Unlimited free virtual cards with unique numbers for each vendor or subscription—freeze, delete, or set custom limits instantly to prevent overcharges and reduce fraud risk [5]
  • AI-powered auto-categorization and receipt matching that connects card transactions and expenses into a single reconciliation workflow [1]
  • Customizable budgets with spend controls based on merchant, amount, receipt requirements, and configurable approval workflows [3]
  • Auto-freeze on cards with incomplete transactions, ensuring receipts and documentation are captured before additional spend is approved [1]
  • Up to 7x points on restaurants, 5x on hotels, 2x on recurring software, and 1.5x on all other purchases (rates shown are for weekly or daily billing cycle; rates vary by billing frequency) [2]
  • Two-way sync with QuickBooks, NetSuite, Sage Intacct, Xero, and Microsoft Dynamics; additional integrations with Acumatica, Slack, and HRIS platforms [1]
  • Pro: $0/user/month with all features included—no paid tier to unlock [4]
  • Pro: Merchant controls and auto-freeze cards at no extra cost [1]
  • Pro: Credit lines that don't fluctuate daily based on bank balance [4]
  • Pro: All ERP integrations (NetSuite, Sage Intacct, Xero) included free [1]
  • Con: 12-month holding period before rewards can be redeemed [2]
  • Con: Category reward multipliers cap at $5,000/month per category [2]
  • Con: Less established in global, enterprise-scale expense programs with multi-country regulatory requirements

BILL Spend & Expense pairs corporate cards with AI-powered expense management and budget controls in a single platform at no cost—teams aren't paying per user or upgrading to unlock features that competitors gate behind paid tiers.

Merchant-level spend controls and auto-freeze on incomplete transactions give admins granular oversight without manual policing, and two-way ERP integrations are included free where Ramp and Brex charge for NetSuite and Sage Intacct access. The main trade-off is an initial 12-month rewards holding period before accumulated points can be redeemed. [1][2][3][4]

Commonly compared to: Ramp and Brex (for card-first expense management), and SAP Concur (for enterprise expense programs).

Pricing
$0/user/month with no annual fee
Integrations
Two-way sync with QuickBooks, NetSuite, Sage Intacct, Xero, and Microsoft
Ideal company size
SMB to mid-market
SAP Concur
Best for large enterprises
4 on G2
  • AI-powered receipt capture via ExpenseIt on the SAP Concur mobile app, with smart matching that combines credit card charges and e-receipts into expense reports automatically [7]
  • Configurable approval workflows with built-in audit rules that flag policy exceptions, plus optional Intelligent Audit and Verify add-ons for automated compliance checks [6][7]
  • Modular product suite: Concur Expense, Concur Travel, and Concur Invoice are separate products that can be purchased individually or together, so organizations can start with expense management and add capabilities over time [6]
  • Bank card feed integrations that import corporate card transactions directly into expense reports for automatic reconciliation [6]
  • Joule, SAP's AI assistant, for expense report review, spend analysis, and cost estimation [6]
  • Budget tracking and monitoring tools that give finance teams visibility into spend against departmental or project-level budgets [6]
  • Support for global operations with multi-currency expense reporting and country-specific tax and regulatory compliance tools [6]
  • Pro: 300+ pre-built integrations including native SAP ERP sync [7][8]
  • Pro: Global coverage with multi-currency and regulatory compliance tools [6]
  • Pro: Modular—add travel or invoice management without switching platforms [6]
  • Pro: AI-powered receipt capture and smart matching via ExpenseIt [7]
  • Con: Quote-based pricing; no published rates on the website [6]
  • Con: No corporate card offering; relies on bank card feed integrations [6]
  • Con: Implementation can be complex for smaller organizations [6]
  • Con: Live support requires purchasing the User Support Desk service [6]

SAP Concur is the incumbent in expense management software, with the largest partner ecosystem and broadest global footprint on this list. Its modular approach gives large organizations flexibility to start with expense management and layer on travel or invoice capabilities independently.

The trade-off is complexity—pricing is opaque, there's no corporate card offering, and smaller teams may find the platform more than they need. Organizations already in the SAP ecosystem will get the most value from native S/4HANA integration. [6][7][8]

Commonly compared to: BILL (for SMB expense management), and Coupa (for enterprise spend management).

  • Best for: Mid-market and enterprise organizations that need a globally scalable expense management platform with configurable compliance tools and a large partner ecosystem. [6][7][8]
  • Highlights: AI-powered receipt capture via ExpenseIt, configurable approval workflows with built-in audit rules, optional Intelligent Audit and Verify add-ons for automated compliance checks, 300+ app integrations, and native SAP ERP sync. [6][7][8]
  • Ideal if you need: An expense platform that integrates natively with SAP S/4HANA or other enterprise ERPs, with the flexibility to add modules like Concur Travel or Concur Invoice over time. [6][7]
Pricing
Quote-based
Integrations
QuickBooks, Xero, Sage,TSheets, Gusto, & most business credit cards.
Ideal Company Size
Mid-market to enterprise
Ramp
Best for a broad spend platform
4.8 on G2
  • Corporate cards with customizable spend controls by merchant, category, employee, or department, plus unlimited virtual and physical cards [9][10]
  • AI-powered receipt matching, transaction coding, and memo suggestions that auto-populate as soon as a card is swiped [9]
  • Policy agent that reviews every expense against company policy, auto-approves compliant transactions, and escalates only exceptions with full audit trail [9]
  • Expense submission via SMS, Slack, or Microsoft Teams in addition to web and mobile app [9]
  • Reimbursements for out-of-pocket expenses paid to employees' bank accounts in 1–2 business days [9]
  • Real-time spend reporting with custom dashboards, natural-language queries, and proactive overspend alerts [9]
  • Broader spend platform that includes AP automation, procurement, vendor management, and treasury alongside expense management [9]
  • Pro: Free plan includes corporate cards, expenses, and bill pay [11]
  • Pro: AI policy agent reviews 100% of expenses automatically [9]
  • Pro: Submit expenses via SMS, Slack, or Teams—no app required [9]
  • Pro: Broader spend platform covers AP, procurement, and vendor management [9]
  • Con: Budget tracking requires Ramp Plus at $15/user/month [11]
  • Con: NetSuite, Sage Intacct, and Dynamics integrations require a paid plan [11]
  • Con: HRIS syncs and auto-lock cards require a paid plan [11]
  • Con: Credit limits fluctuate daily based on connected bank balance [12]

Ramp's strength is breadth—it's not just an expense tool but a full spend management platform that includes AP automation, procurement, and vendor management alongside expenses. The AI policy agent is a differentiator, reviewing every transaction against company rules rather than relying on manual manager approvals.

The trade-off is that several features mid-market teams rely on—budget tracking, ERP integrations beyond QuickBooks and Xero, and HRIS syncs—require upgrading to Ramp Plus at $15/user/month plus a platform fee. [9][11]

Commonly compared to: Brex and BILL (for corporate cards and expense management), and SAP Concur (for enterprise expense programs).

  • Best for: Fast-growing companies that want corporate cards, expense management, and accounts payable on a single platform with AI-powered automation. [9][10]
  • Highlights: Corporate cards with built-in spend controls, AI-powered receipt matching and expense coding, a policy agent that reviews 100% of expenses and flags only exceptions, and submission via SMS, Slack, or Microsoft Teams. [9][10]
  • Ideal if you need: A card-first platform where expense management is one part of a larger system that also covers AP, procurement, and vendor management. [9]
Pricing
$0/user/month
Integrations
QuickBooks, NetSuite, Xero, Sage Intacct, Slack, & 100+ accounting tools.
Ideal Company Size
Startups to mid-market
Brex
Best for global teams
4.8 on G2
  • Corporate cards with customizable spend limits by role, department, or category, plus auto-approve for in-policy expenses and auto-decline for out-of-policy spend [13][14]
  • AI-powered expense reviews that auto-approve compliant transactions and surface only exceptions for human review, with clear visibility into why a transaction is flagged [13]
  • Auto-generated receipts and memos with OCR that matches receipts in any language or currency, plus automatic GL coding by department, project, and entity [13]
  • Live Budgets that let department heads set top-level budgets, provision spend to individuals or teams, and track usage in real time with anomaly detection [13]
  • Global reimbursements in 70+ countries in employees' local currency, with subsidiaries able to issue reimbursements from local bank accounts [13]
  • Expense submission and approval via Slack and WhatsApp, with in-app commenting on individual transactions [13]
  • Broader financial platform that includes bill pay, business banking with up to 3.68% yield, and treasury alongside expense management [14]
  • Pro: Free plan includes corporate cards, expenses, bill pay, and travel [15]
  • Pro: AI expense reviews with 99% average policy compliance rate [14]
  • Pro: Global reimbursements in 70+ countries in local currency [13]
  • Pro: Live Budgets with real-time tracking and anomaly detection [13]
  • Con: Live Budgets require Premium at $12/user/month [15]
  • Con: HRIS syncs and customizable ERP integrations require a paid plan [15]
  • Con: Credit limits fluctuate daily based on connected bank balance [16]
  • Con: Multiple expense policies and dynamic review chains require Premium [15]

Brex positions itself as a full financial stack for startups—cards, expenses, banking, and treasury in one platform. The AI expense reviews and 99% average compliance rate (per Brex's internal metrics) are notable, and the global reimbursement coverage across 70+ countries is broader than most competitors on this list.

Like Ramp, Brex gates budget management and HRIS integrations behind a paid tier, and credit limits fluctuate daily based on your bank balance. Teams that need predictable spending power or are past the startup stage may find the pricing structure adds up. [13][14][15]

Commonly compared to: Ramp and BILL (for corporate cards and expense management), and SAP Concur (for enterprise expense programs).

  • Best for: Startups and high-growth companies that want a global financial platform covering corporate cards, expense management, bill pay, and business banking. [13][14]
  • Highlights: AI-powered expense reviews that auto-approve compliant transactions, corporate cards with built-in policy controls, Live Budgets for real-time tracking, global reimbursements in 70+ countries, and OCR receipt matching in any language or currency. [13][14]
  • Ideal if you need: A financial platform built for startups that includes expense management as part of a broader stack with banking, treasury, and AP. [13][14]
Pricing
$0/user/month
Integrations
NetSuite, QuickBooks, Workday,SAP Concur, Slack, & global banking portals.
Ideal Company Size
Startups to mid-market
Expensify
Best for simple reimbursements
4.5 on G2
  • SmartScan receipt capture by photo, email forwarding (receipts@expensify.com), or text message; auto-extracts transaction details and categorizes expenses [17]
  • Bring-your-own-card support: link existing corporate cards from 10,000+ banks globally for automatic reconciliation without switching card providers [17]
  • Expensify Visa Commercial Card with cash back on US purchases; cash back first offsets the Expensify subscription cost, then flows to the company's bank account [17]
  • Concierge AI for automated expense categorization, policy violation flagging, rule enforcement, and error reduction [17]
  • Global reimbursements for employees and independent contractors in their local currency [17]
  • Chat-based collaboration directly on individual expenses to resolve questions in real time rather than through email follow-ups [17]
  • 45+ integrations including QuickBooks, NetSuite, Sage Intacct, Xero, Workday, and Gusto [17]
  • Pro: Bring-your-own-card from 10,000+ banks globally [17]
  • Pro: Expensify Card cash back can offset the subscription cost [17]
  • Pro: SmartScan receipt capture by photo, email, or text message [17]
  • Pro: 45+ integrations including major ERPs and payroll systems [17]
  • Con: No free plan; starts at $5/user/month [18]
  • Con: Pricing structure varies by card spend volume [18]
  • Con: Budget management, advanced approvals, and expense policies require Collect or Control plans [17]
  • Con: No department-level budget management on par with card-first platforms

Expensify's strength is accessibility—it has the lowest barrier to entry for teams that just need to start tracking expenses and submitting receipts. The bring-your-own-card support from 10,000+ banks means companies don't have to switch card providers, and the SmartScan receipt capture (by photo, email, or text) is one of the more flexible input methods on this list.

The trade-off is that several features mid-market teams expect—budget management, advanced approvals, and expense policies—require upgrading to the Collect or Control plans, and spend controls are primarily limited to the Expensify Card rather than extending across all connected cards. [17][18]

Commonly compared to: Zoho Expense (for budget-friendly expense management), and BILL and Ramp (for integrated cards and expenses).

  • Best for: Small and midsize businesses that want a mobile-first expense management tool with flexible card options, including the ability to link existing corporate cards from 10,000+ banks. [17]
  • Highlights: SmartScan receipt capture by photo, email, or text message; bring-your-own-card support from 10,000+ banks globally; Expensify Visa Commercial Card with cash back that offsets subscription costs; and Concierge AI for automated categorization and policy enforcement. [17]
  • Ideal if you need: A lower-cost entry point for expense management where employees can start submitting receipts immediately without switching corporate card providers. [17]
Pricing
From $5/user/month
Integrations
QuickBooks, Xero, Sage, TSheets, Gusto, & most business credit cards.
Ideal Company Size
Small to mid-market
Zoho Expense
Best for budget-conscious teams
4.5 on G2
  • Autoscan receipt capture with OCR that auto-categorizes and itemizes each expense, plus the ability to split or tag expenses across departments, projects, or cost centers [19][20]
  • Automated per diem calculations with pre-defined rules based on country, location, and trip details for regional compliance [20]
  • Corporate card management with real-time feeds that automatically match transactions to uploaded receipts for faster reconciliation [20]
  • Mileage tracking with four input methods across Android, iPhone, and Apple Watch [20]
  • Configurable approval workflows, expense policies, and audit rules with detailed audit trails for compliance [19][20]
  • Custom modules, workflow automation, webhooks, and configurable UI elements for businesses that need tailored expense processes [19]
  • Active-user pricing model: only employees who actually create expenses are charged, so admins and approvers who don't submit reports are free [21]
  • Pro: Free plan available for up to 3 users with core expense tracking [21]
  • Pro: Active-user pricing—admins and approvers aren't charged [21]
  • Pro: Automated per diem calculations by country and location [20]
  • Pro: Deep customization with custom modules and workflow automation [19]
  • Con: Corporate card feeds and multi-level approvals require Standard plan [21]
  • Con: Deepest value requires the broader Zoho ecosystem (Books, People, CRM) [19]
  • Con: No corporate card offering; relies on connecting existing cards [20]
  • Con: Travel booking, per diem, and live budgets require Premium plan [21]

Zoho Expense offers unusually deep customization at a low price point—custom modules, workflow automation, webhooks, and configurable UI elements that most competitors don't expose. The active-user pricing model is genuinely cost-effective for companies where only a portion of employees submit expenses regularly.

The trade-off is that there's no corporate card offering—you'll need to connect your existing cards—and the platform delivers its deepest value when used alongside other Zoho products like Zoho Books and Zoho People. [19][20][21]

Commonly compared to: Expensify (for budget-friendly expense management), and SAP Concur (for global compliance and customization).

  • Best for: Small and midsize businesses that want an affordable, highly customizable expense management platform with strong global compliance features and active-user pricing. [19][20][21]
  • Highlights: Autoscan receipt capture with OCR, automated per diem calculations by country and location, corporate card reconciliation with real-time feeds, mileage tracking across multiple input methods, and active-user pricing starting at $4/user/month. [19][20][21]
  • Ideal if you need: A low-cost expense management tool with deep customization options and native integration with the broader Zoho ecosystem (Zoho Books, Zoho People, Zoho CRM). [19][20]
Pricing
Free (3 users); from $4/user/month
Integrations
Zoho Books, QuickBooks, Xero, Sage, Microsoft Dynamics, & Google Workspace.
Ideal Company Size
Small to mid-market